MLOC_82021 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains5.448427.043146.313556.00664
LEAShoots from the seedlings (10 cm shoot stage)3.366161.002650.7149331.49573
INF1Young developing inflorescences (5mm)23.433726.325824.06219.0473
INF2Developing inflorescences (1-1.5 cm)23.689229.749225.924427.5049
ROORoots from the seedlings (10 cm shoot stage)2.085554.185475.804024.54019
NODDeveloping tillers at six leaf stage, 3rd internode0.9900971.321941.3324.45619
CAR5Developing grain, bracts removed (5 DPA)6.744586.681597.486536.24547
CAR15Developing grain, bracts removed (15 DPA)0.8119950.4127461.109881.52526



CDS Structure of MLOC_82021






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_82021.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_82021.3CUST_16912_PI427708080AvailableAvailablecontig_99452 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g71960.1 +1 2e-135 408 228/344 (66%) 13101.m07839 protein endonuclease, putative, expressed
TAIR PP10 AT4G30870.1 +1 6e-93 297 163/312 (52%) | Symbols: ATMUS81, MUS81 | Restriction endonuclease, type II-like superfamily protein | chr4:15028586-15032461 FORWARD LENGTH=659