MLOC_81957 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.438093.925183.628924.40928
LEAShoots from the seedlings (10 cm shoot stage)00.066276500.0534754
INF1Young developing inflorescences (5mm)0.02819250.064634300.0470691
INF2Developing inflorescences (1-1.5 cm)00.027405400.0474948
ROORoots from the seedlings (10 cm shoot stage)12.56028.163938.699149.64753
NODDeveloping tillers at six leaf stage, 3rd internode0.3940770.1470080.09049360.363069
CAR5Developing grain, bracts removed (5 DPA)0.6560391.471141.069421.14265
CAR15Developing grain, bracts removed (15 DPA)0.0240028000.0839233



CDS Structure of MLOC_81957






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_81957.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK376111NoneNoneNoneNone
MLOC_81957.1CUST_6860_PI427708080AvailableAvailablecontig_99144 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g14650.1 -1 3e-133 389 192/228 (84%) 13101.m01611 protein expansin precursor, putative, expressed
TAIR PP10 AT1G69530.2 -1 9e-98 297 157/226 (69%) | Symbols: ATEXPA1, EXP1, AT-EXP1, ATEXP1, ATHEXP ALPHA 1.2, EXPA1 | expansin A1 | chr1:26142034-26143051 FORWARD LENGTH=250