MLOC_8186 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.06427880.0532470.07465350.0602948
LEAShoots from the seedlings (10 cm shoot stage)00.2009220.1863870.18203
INF1Young developing inflorescences (5mm)0.08799410.04981300.0639733
INF2Developing inflorescences (1-1.5 cm)0.1714050.04147560.2133150.146952
ROORoots from the seedlings (10 cm shoot stage)0000
NODDeveloping tillers at six leaf stage, 3rd internode00.06482460.04962820.264326
CAR5Developing grain, bracts removed (5 DPA)0.7114641.047320.789220.824844
CAR15Developing grain, bracts removed (15 DPA)0.1330030.300660.1931430.494715



CDS Structure of MLOC_8186






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_8186.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_8186.2CUST_10920_PI427708083AvailableAvailablecontig_141428 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g27140.2 +2 4e-134 387 191/228 (84%) 13109.m02637 protein expressed protein
TAIR PP10 AT2G28230.1 +2 7e-80 247 111/220 (50%) TATA-binding related factor (TRF) of subunit 20 of Mediator complex | chr2:12037855-12039009 REVERSE LENGTH=219