- Predicted Gene MLOC_81840
MLOC_81840 FPKM values
| FPKM by Treatment | FPKM by Replicate |
|---|
| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 16.1243 | 22.9096 | 21.3717 | 18.2786 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 25.0124 | 15.7898 | 18.4671 | 15.0713 |
| INF1 | Young developing inflorescences (5mm) | 30.0238 | 36.3927 | 46.5487 | 28.1625 |
| INF2 | Developing inflorescences (1-1.5 cm) | 53.6219 | 51.1944 | 58.6605 | 53.654 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 14.2622 | 24.251 | 24.6453 | 22.5185 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 31.1416 | 35.545 | 35.8711 | 100.52 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 52.8726 | 51.4168 | 48.2829 | 44.299 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 21.9085 | 21.765 | 22.3925 | 47.121 |
CDS Structure of MLOC_81840
Members of Gene Cluster
This cluster has a confidence assignment of
non-High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_81840.3
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os04g54640.2 |
-3 |
5e-52 |
185 |
96/124 (77%) |
13104.m05655 protein peptidase, cysteine peptidase active site, putative, expressed |
| TAIR PP10 |
AT2G21960.1 |
-3 |
6e-42 |
156 |
79/124 (64%) |
unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G56180.1); Has 224 Blast hits to 222 proteins in 59 species: Archae - 0; Bacteria - 65; Metazoa - 0; Fungi - 0; Plants - 134; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). | chr2:9354990-9356958 FORWARD LENGTH=332 |
