MLOC_81602 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.06456010.05651950.0813830.0581191
LEAShoots from the seedlings (10 cm shoot stage)0.09691170.053540600.0620582
INF1Young developing inflorescences (5mm)0.4034650.1372181.040650.371291
INF2Developing inflorescences (1-1.5 cm)0.1340620.1068080.1446370.125364
ROORoots from the seedlings (10 cm shoot stage)0.1135830.032658200.0759808
NODDeveloping tillers at six leaf stage, 3rd internode1.675060.9560710.7133412.58381
CAR5Developing grain, bracts removed (5 DPA)0.308730.3663480.179070.256115
CAR15Developing grain, bracts removed (15 DPA)0.6463610.1411570.6775560.997918



CDS Structure of MLOC_81602






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_81602.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_81602.2CUST_10883_PI427708083AvailableAvailablecontig_97165 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g09930.2 +2 5e-19 92 57/128 (45%) 13102.m01096 protein CSLA1 - cellulose synthase-like family A; mannan synthase, expressed
TAIR PP10 AT5G22740.1 +2 5e-19 86 40/63 (63%) | Symbols: ATCSLA02, CSLA02, ATCSLA2, CSLA2 | cellulose synthase-like A02 | chr5:7555379-7559866 REVERSE LENGTH=534