MLOC_81480 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.396860.6700560.8188770.759652
LEAShoots from the seedlings (10 cm shoot stage)0.9754672.513593.82381.53711
INF1Young developing inflorescences (5mm)1.803351.469631.826861.1169
INF2Developing inflorescences (1-1.5 cm)1.415751.629841.731531.40278
ROORoots from the seedlings (10 cm shoot stage)2.582830.6989612.653591.19125
NODDeveloping tillers at six leaf stage, 3rd internode1.964813.24384.569767.94978
CAR5Developing grain, bracts removed (5 DPA)0.6134290.4462060.2772850.371051
CAR15Developing grain, bracts removed (15 DPA)0.4160120.4337790.408460.777686



CDS Structure of MLOC_81480






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_81480.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_81480.2CUST_10869_PI427708083AvailableAvailablecontig_9652 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g07050.1 +3 4e-17 82 49/81 (60%) 13105.m00763 protein pre-mRNA-processing-splicing factor 8, putative, expressed
TAIR PP10 AT1G80070.1 +3 3e-16 78 46/81 (57%) | Symbols: SUS2, EMB33, EMB177, EMB14 | Pre-mRNA-processing-splicing factor | chr1:30118052-30127574 FORWARD LENGTH=2359