- Predicted Gene MLOC_81480
MLOC_81480 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_81480_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_81480_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 1.39686 | 0.670056 | 0.818877 | 0.759652 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 0.975467 | 2.51359 | 3.8238 | 1.53711 |
INF1 | Young developing inflorescences (5mm) | 1.80335 | 1.46963 | 1.82686 | 1.1169 |
INF2 | Developing inflorescences (1-1.5 cm) | 1.41575 | 1.62984 | 1.73153 | 1.40278 |
ROO | Roots from the seedlings (10 cm shoot stage) | 2.58283 | 0.698961 | 2.65359 | 1.19125 |
NOD | Developing tillers at six leaf stage, 3rd internode | 1.96481 | 3.2438 | 4.56976 | 7.94978 |
CAR5 | Developing grain, bracts removed (5 DPA) | 0.613429 | 0.446206 | 0.277285 | 0.371051 |
CAR15 | Developing grain, bracts removed (15 DPA) | 0.416012 | 0.433779 | 0.40846 | 0.777686 |
CDS Structure of MLOC_81480
Members of Gene Cluster
This cluster has a confidence assignment of
non-High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_81480.2
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os05g07050.1 |
+3 |
4e-17 |
82 |
49/81 (60%) |
13105.m00763 protein pre-mRNA-processing-splicing factor 8, putative, expressed |
TAIR PP10 |
AT1G80070.1 |
+3 |
3e-16 |
78 |
46/81 (57%) |
| Symbols: SUS2, EMB33, EMB177, EMB14 | Pre-mRNA-processing-splicing factor | chr1:30118052-30127574 FORWARD LENGTH=2359 |