MLOC_81445 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.21645.031585.569335.56862
LEAShoots from the seedlings (10 cm shoot stage)5.765762.5374.099423.67218
INF1Young developing inflorescences (5mm)17.772616.504617.793714.7215
INF2Developing inflorescences (1-1.5 cm)14.088120.473516.642319.2002
ROORoots from the seedlings (10 cm shoot stage)2.341025.450293.218285.95607
NODDeveloping tillers at six leaf stage, 3rd internode2.137792.922323.950759.98786
CAR5Developing grain, bracts removed (5 DPA)6.466167.018316.306436.47084
CAR15Developing grain, bracts removed (15 DPA)8.8148.179517.8720219.6238



CDS Structure of MLOC_81445






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_81445.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_81445.1CUST_16846_PI427708080AvailableAvailablecontig_96354 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g40740.1 -1 3e-76 249 154/212 (73%) 13106.m04245 protein expressed protein
TAIR PP10 AT5G50350.1 -1 5e-19 88 64/191 (34%) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:20498697-20501611 REVERSE LENGTH=584