MLOC_81213 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains9.9401818.204217.041516.0639
LEAShoots from the seedlings (10 cm shoot stage)25.031625.501725.074421.9113
INF1Young developing inflorescences (5mm)31.461434.637833.454227.907
INF2Developing inflorescences (1-1.5 cm)44.059644.810438.136547.1105
ROORoots from the seedlings (10 cm shoot stage)16.160923.890518.678227.7663
NODDeveloping tillers at six leaf stage, 3rd internode14.608919.119618.859565.023
CAR5Developing grain, bracts removed (5 DPA)38.943535.679737.798136.2755
CAR15Developing grain, bracts removed (15 DPA)17.906717.998717.373140.952



CDS Structure of MLOC_81213






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_81213.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK372009NoneNoneNoneNone
MLOC_81213.1CUST_6826_PI427708080AvailableAvailablecontig_95091 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g19660.1 +2 0.0 1856 980/1267 (77%) 13106.m02100 protein WD domain, G-beta repeat domain containing protein, expressed
TAIR PP10 AT3G13300.2 +2 0.0 1051 608/1263 (48%) | Symbols: VCS | Transducin/WD40 repeat-like superfamily protein | chr3:4304085-4309949 FORWARD LENGTH=1309