MLOC_81212 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.1414710.3056030.4066560.278008
LEAShoots from the seedlings (10 cm shoot stage)0.1438610.1587030.2876030.157793
INF1Young developing inflorescences (5mm)0.5727931.016050.8120170.653588
INF2Developing inflorescences (1-1.5 cm)0.8511690.8424450.6254730.851084
ROORoots from the seedlings (10 cm shoot stage)0.05984620.1294090.08905330.133068
NODDeveloping tillers at six leaf stage, 3rd internode0.04737240.317420.3703060.950604
CAR5Developing grain, bracts removed (5 DPA)0.5758150.7453080.5857790.607873
CAR15Developing grain, bracts removed (15 DPA)0.1757920.2739710.2927670.548711



CDS Structure of MLOC_81212






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_81212.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_81212.3NoneAvailableAvailablecontig_95085 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g45000.3 +1 3e-49 173 96/135 (71%) 13106.m04732 protein ubiquitin-conjugating enzyme, putative, expressed
TAIR PP10 AT5G05080.2 +1 6e-30 120 76/138 (55%) | Symbols: UBC22, ATUBC22 | ubiquitin-conjugating enzyme 22 | chr5:1498727-1499972 REVERSE LENGTH=251