morexGenes - Barley RNA-seq Database

Predicted Gene MLOC_81206

Gene IDMLOC_81206
Source Contig contig_950532

Gene Data

|FPKM Values|
|CDS Structures|
|Gene Cluster Members|
|Homology to Models|

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MLOC_81206 FPKM values

FPKM by Treatment	FPKM by Replicate
There are no FPKM-by-treatment values calculated for this gene.

Treatment ID	Treatment Description	Rep 1 FPKM	Rep 2 FPKM	Rep 3 FPKM	Treatment FPKM
EMB	4-day embryos dissected from germinating grains	0.240313	1.70674	0.306892	0
LEA	Shoots from the seedlings (10 cm shoot stage)	0	0.76347	0.694445	0
INF1	Young developing inflorescences (5mm)	2.64692	0.803658	1.63368	0
INF2	Developing inflorescences (1-1.5 cm)	2.15524	1.12002	1.35727	0
ROO	Roots from the seedlings (10 cm shoot stage)	0.862502	0.696211	0	0
NOD	Developing tillers at six leaf stage, 3rd internode	0	0.30248	0.57616	0
CAR5	Developing grain, bracts removed (5 DPA)	1.74886	2.19278	1.31659	0
CAR15	Developing grain, bracts removed (15 DPA)	1.05326	0.762813	1.84561	0

CDS Structure of MLOC_81206

Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by AK365455

Cluster member	Probe ID	FPKM by replicate	FPKM by treatment	Source Contig
AK365455	CUST_21100_PI427708080	None	None	None
MLOC_22499.1	None	Available	None	contig_1607697 (Mapped)
MLOC_2880.1	None	Available	None	contig_1256906 (Not mapped)
MLOC_33449.3	None	Available	None	contig_237464 (Mapped)
MLOC_33747.1	None	Available	None	contig_2399409 (Not mapped)
MLOC_35767.2	None	Available	None	contig_252128 (Not mapped)
MLOC_36016.1	None	Available	None	contig_2530629 (Not mapped)
MLOC_38288.1	None	Available	Available	contig_2550115 (Mapped)
MLOC_40505.2	None	Available	None	contig_2560483 (Mapped)
MLOC_41972.1	None	Available	None	contig_2616564 (Not mapped)
MLOC_43895.1	None	Available	None	contig_273304 (Mapped)
MLOC_50023.1	None	Available	None	contig_352781 (Not mapped)
MLOC_6144.1	None	Available	None	contig_1371210 (Not mapped)
MLOC_81206.1	None	Available	None	contig_950532 (Not mapped)

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP6	None	-	-	-	-	-
TAIR PP10	None	-	-	-	-	-