MLOC_81109 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.729255.951176.592095.11486
LEAShoots from the seedlings (10 cm shoot stage)402.912425.315476.619351.866
INF1Young developing inflorescences (5mm)5.057871.746833.101872.80568
INF2Developing inflorescences (1-1.5 cm)1.111341.158191.870891.46116
ROORoots from the seedlings (10 cm shoot stage)1.284515.3015917.41116.7528
NODDeveloping tillers at six leaf stage, 3rd internode715.84525.974837.8431747.1
CAR5Developing grain, bracts removed (5 DPA)42.975142.435136.503140.3548
CAR15Developing grain, bracts removed (15 DPA)1.648692.305372.5424.97857



CDS Structure of MLOC_81109






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_81109.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_81109.1CUST_16810_PI427708080AvailableAvailablecontig_94468 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g52240.1 -1 1e-168 478 231/254 (91%) 13101.m05463 protein chlorophyll A-B binding protein, putative, expressed
TAIR PP10 AT2G34420.1 -1 2e-159 454 226/255 (89%) | Symbols: LHB1B2, LHCB1.5 | photosystem II light harvesting complex gene B1B2 | chr2:14522716-14523513 REVERSE LENGTH=265