MLOC_81051 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains00.1454700.269045
LEAShoots from the seedlings (10 cm shoot stage)0.4402120.4619440.1136290.320632
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0.09785780.05833460.2971590.15184
ROORoots from the seedlings (10 cm shoot stage)0.1415050.2342050.3478140.335653
NODDeveloping tillers at six leaf stage, 3rd internode00.05487710.04518760.307983
CAR5Developing grain, bracts removed (5 DPA)0.1891320.103640.1197520.141956
CAR15Developing grain, bracts removed (15 DPA)000.05238190.0831864



CDS Structure of MLOC_81051






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_81051.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_81051.1NoneAvailableAvailablecontig_94212 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g23770.1 -3 7e-59 208 122/335 (36%) 13112.m02415 protein retrotransposon protein, putative, LINE subclass
TAIR PP10 AT3G24255.1 -3 8e-19 89 82/313 (26%) RNA-directed DNA polymerase (reverse transcriptase)-related family protein | chr3:8789471-8793208 FORWARD LENGTH=746