MLOC_80996 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains5.087876.711245.803296.34476
LEAShoots from the seedlings (10 cm shoot stage)4.838712.929393.241453.32112
INF1Young developing inflorescences (5mm)18.623620.011823.007617.6054
INF2Developing inflorescences (1-1.5 cm)19.376721.025119.599622.5962
ROORoots from the seedlings (10 cm shoot stage)2.696185.57084.1896.69941
NODDeveloping tillers at six leaf stage, 3rd internode1.25332.628595.0628310.9895
CAR5Developing grain, bracts removed (5 DPA)6.757627.465288.080067.50837
CAR15Developing grain, bracts removed (15 DPA)1.634351.07461.365693.17104



CDS Structure of MLOC_80996






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_80996.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK365249NoneNoneNoneNone
MLOC_80996.2CUST_6810_PI427708080AvailableAvailablecontig_93981 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g54340.1 +3 0.0 1053 548/641 (85%) 13104.m05619 protein double-strand break repair protein MRE11, putative, expressed
TAIR PP10 AT5G54260.1 +3 0.0 882 447/606 (74%) | Symbols: MRE11, ATMRE11 | DNA repair and meiosis protein (Mre11) | chr5:22032702-22037749 FORWARD LENGTH=720