MLOC_80995 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.06968540.062282600.0821929
LEAShoots from the seedlings (10 cm shoot stage)8.0868916.71079.723699.5994
INF1Young developing inflorescences (5mm)0.053268000.049834
INF2Developing inflorescences (1-1.5 cm)0.2128970.09931910.06541780.154067
ROORoots from the seedlings (10 cm shoot stage)00.142380.1806790.233098
NODDeveloping tillers at six leaf stage, 3rd internode3.950172.744994.824799.81155
CAR5Developing grain, bracts removed (5 DPA)4.585563.082453.849493.70448
CAR15Developing grain, bracts removed (15 DPA)2.342572.821272.012056.23727



CDS Structure of MLOC_80995






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_80995.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_80995.1CUST_10819_PI427708083AvailableAvailablecontig_93971 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g03290.4 +1 7e-31 119 54/75 (72%) 13108.m00278 protein glyceraldehyde-3-phosphate dehydrogenase, putative, expressed
TAIR PP10 AT1G13440.2 +1 3e-32 122 55/74 (74%) | Symbols: GAPC-2, GAPC2 | glyceraldehyde-3-phosphate dehydrogenase C2 | chr1:4608465-4610494 REVERSE LENGTH=310