MLOC_80902 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains15.901220.281319.701420.3226
LEAShoots from the seedlings (10 cm shoot stage)1.976830.7813590.5566030.918207
INF1Young developing inflorescences (5mm)46.806935.730739.402437.0427
INF2Developing inflorescences (1-1.5 cm)200.528185.866162.144222.578
ROORoots from the seedlings (10 cm shoot stage)18.59411.986322.732816.4737
NODDeveloping tillers at six leaf stage, 3rd internode0.800910.781940.6340552.0363
CAR5Developing grain, bracts removed (5 DPA)1.19271.706721.352271.59352
CAR15Developing grain, bracts removed (15 DPA)2.064391.064554.985656.05956



CDS Structure of MLOC_80902






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_80902.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_80902.1CUST_16792_PI427708080AvailableAvailablecontig_93462 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g52680.1 +1 6e-81 246 135/152 (89%) 13101.m05516 protein OsMADS32 - MADS-box family gene with MIKCc type-box, expressed
TAIR PP10 AT5G20240.1 +1 8e-20 86 52/140 (37%) | Symbols: PI | K-box region and MADS-box transcription factor family protein | chr5:6829203-6831208 FORWARD LENGTH=208