MLOC_80892 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains167.764113.142118.606122.409
LEAShoots from the seedlings (10 cm shoot stage)153.612158.101221.128132.394
INF1Young developing inflorescences (5mm)248.705251.77286.225226.532
INF2Developing inflorescences (1-1.5 cm)232.987298.149306.703305.983
ROORoots from the seedlings (10 cm shoot stage)329.957218.639273.308248.372
NODDeveloping tillers at six leaf stage, 3rd internode104.01173.006192.372415.203
CAR5Developing grain, bracts removed (5 DPA)88.0017103.98494.87594.3454
CAR15Developing grain, bracts removed (15 DPA)21.463321.488221.225152.1743



CDS Structure of MLOC_80892






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_80892.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK372527NoneNoneNoneNone
MLOC_80892.1CUST_6808_PI427708080AvailableAvailablecontig_93403 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g36140.1 +2 2e-41 145 94/95 (99%) 13107.m24468 protein core histone H2A/H2B/H3/H4, putative, expressed
TAIR PP10 AT5G54640.1 +2 1e-40 142 92/95 (97%) | Symbols: HTA1, RAT5, ATHTA1 | Histone superfamily protein | chr5:22196540-22197279 FORWARD LENGTH=130