MLOC_80875 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0000
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0.1927730.3063090.2907440.30725
ROORoots from the seedlings (10 cm shoot stage)0000
NODDeveloping tillers at six leaf stage, 3rd internode0000
CAR5Developing grain, bracts removed (5 DPA)5.540625.144524.958055.32741
CAR15Developing grain, bracts removed (15 DPA)0.0316197000.117152



CDS Structure of MLOC_80875






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_80875.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_80875.1CUST_16789_PI427708080AvailableAvailablecontig_93310 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g54160.2 -3 3e-91 286 176/353 (50%) 13102.m12340 protein AP2 domain containing protein, expressed
TAIR PP10 AT1G53910.3 -3 6e-29 117 116/382 (30%) | Symbols: RAP2.12 | related to AP2 12 | chr1:20135242-20136581 FORWARD LENGTH=356