MLOC_80818 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.515362.246072.128641.8739
LEAShoots from the seedlings (10 cm shoot stage)16.413719.2915.812113.9698
INF1Young developing inflorescences (5mm)8.039877.082858.522196.03517
INF2Developing inflorescences (1-1.5 cm)15.726514.492814.219915.0246
ROORoots from the seedlings (10 cm shoot stage)0.7923741.537971.100941.57836
NODDeveloping tillers at six leaf stage, 3rd internode13.457719.738819.433463.6698
CAR5Developing grain, bracts removed (5 DPA)4.672194.028694.523543.89523
CAR15Developing grain, bracts removed (15 DPA)0.8166470.723310.6214381.55049



CDS Structure of MLOC_80818






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_80818.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK356478NoneNoneNoneNone
MLOC_80818.1CUST_6802_PI427708080AvailableAvailablecontig_92923 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g32650.1 +2 0.0 1067 520/572 (91%) 13104.m03133 protein tRNA synthetase class II core domain containing protein, expressed
TAIR PP10 AT1G29880.1 +2 0.0 922 450/566 (80%) glycyl-tRNA synthetase / glycine--tRNA ligase | chr1:10459662-10462781 REVERSE LENGTH=729