MLOC_80801 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains20.600821.658220.422820.5297
LEAShoots from the seedlings (10 cm shoot stage)21.361116.386812.598913.2585
INF1Young developing inflorescences (5mm)23.712926.732828.43622.9219
INF2Developing inflorescences (1-1.5 cm)51.549344.932450.653753.3429
ROORoots from the seedlings (10 cm shoot stage)29.872230.446231.754132.3886
NODDeveloping tillers at six leaf stage, 3rd internode46.131457.131662.5985145.314
CAR5Developing grain, bracts removed (5 DPA)50.530256.13747.917750.0534
CAR15Developing grain, bracts removed (15 DPA)16.939316.175217.11741.0121



CDS Structure of MLOC_80801






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_80801.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_80801.1CUST_16783_PI427708080AvailableAvailablecontig_92879 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g05280.1 +3 2e-93 285 138/147 (94%) 13105.m00547 protein zinc finger family protein, putative, expressed
TAIR PP10 AT3G47990.1 +3 4e-78 244 115/147 (78%) | Symbols: SIS3 | SUGAR-INSENSITIVE 3 | chr3:17713367-17716051 REVERSE LENGTH=358