MLOC_80800 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains5.430785.425365.615785.69246
LEAShoots from the seedlings (10 cm shoot stage)5.0746119.597612.654210.325
INF1Young developing inflorescences (5mm)00.06803950.03521070.0577243
INF2Developing inflorescences (1-1.5 cm)0.063126300.07210210.0895035
ROORoots from the seedlings (10 cm shoot stage)3.075872.45053.312032.91013
NODDeveloping tillers at six leaf stage, 3rd internode0.5857640.2043540.7698860.834641
CAR5Developing grain, bracts removed (5 DPA)0.1591790.3779620.5748820.416781
CAR15Developing grain, bracts removed (15 DPA)0.09757590.0879710.03480550.230144



CDS Structure of MLOC_80800






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_80800.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK358426CUST_24128_PI427708080NoneNoneNone
MLOC_80800.2CUST_18491_PI427708080AvailableAvailablecontig_92179 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g40250.1 -3 4e-114 340 195/284 (69%) 13107.m04182 protein sex determination protein tasselseed-2, putative, expressed
TAIR PP10 AT3G26770.1 -3 3e-74 237 131/271 (48%) NAD(P)-binding Rossmann-fold superfamily protein | chr3:9845494-9847079 FORWARD LENGTH=306