MLOC_80738 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains99.23261.392366.873569.7932
LEAShoots from the seedlings (10 cm shoot stage)54.994754.02452.77844.6247
INF1Young developing inflorescences (5mm)41.095955.536259.520339.8854
INF2Developing inflorescences (1-1.5 cm)39.419941.171943.556643.5452
ROORoots from the seedlings (10 cm shoot stage)78.577366.129553.589277.6006
NODDeveloping tillers at six leaf stage, 3rd internode50.494752.721940.8344164.799
CAR5Developing grain, bracts removed (5 DPA)50.489750.592950.589348.1539
CAR15Developing grain, bracts removed (15 DPA)10.469610.16049.7772621.5



CDS Structure of MLOC_80738






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_80738.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_80738.1CUST_10781_PI427708083AvailableAvailablecontig_9253 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g29620.1 -2 1e-136 401 189/220 (86%) 13107.m02977 protein OsSCP39 - Putative Serine Carboxypeptidase homologue, expressed
TAIR PP10 AT3G10410.1 -2 5e-106 322 147/206 (71%) | Symbols: SCPL49, CPY | SERINE CARBOXYPEPTIDASE-LIKE 49 | chr3:3235518-3238063 REVERSE LENGTH=516