MLOC_80727 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0000
LEAShoots from the seedlings (10 cm shoot stage)000.1645320.117144
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)0000
NODDeveloping tillers at six leaf stage, 3rd internode0000
CAR5Developing grain, bracts removed (5 DPA)32.915340.558736.60635.0431
CAR15Developing grain, bracts removed (15 DPA)0.1874150.2142470.0907280.47015



CDS Structure of MLOC_80727






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_80727.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK377014NoneNoneNoneNone
MLOC_80727.1CUST_516_PI427708083AvailableAvailablecontig_92497 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g03420.1 -1 2e-21 88 48/86 (56%) 13111.m00281 protein ZF-HD protein dimerisation region containing protein, expressed
TAIR PP10 AT1G18835.1 -1 2e-16 73 37/64 (58%) | Symbols: MIF3 | mini zinc finger | chr1:6496106-6496372 REVERSE LENGTH=88