- Predicted Gene MLOC_80715
MLOC_80715 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 4.8664 | 15.4245 | 12.4484 | 14.4609 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 14.2104 | 9.90746 | 7.77837 | 10.5384 |
INF1 | Young developing inflorescences (5mm) | 35.5677 | 34.1788 | 31.1056 | 31.3956 |
INF2 | Developing inflorescences (1-1.5 cm) | 43.3287 | 38.8933 | 34.7363 | 47.8502 |
ROO | Roots from the seedlings (10 cm shoot stage) | 3.40677 | 8.1162 | 6.28793 | 11.42 |
NOD | Developing tillers at six leaf stage, 3rd internode | 3.98007 | 5.48361 | 4.34248 | 21.5149 |
CAR5 | Developing grain, bracts removed (5 DPA) | 31.7125 | 28.5966 | 27.6768 | 32.2981 |
CAR15 | Developing grain, bracts removed (15 DPA) | 44.9611 | 41.582 | 40.0387 | 107.185 |
CDS Structure of MLOC_80715
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_80715.2
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os06g29430.1 |
+3 |
0.0 |
1575 |
968/1619 (60%) |
13106.m03039 protein cytidine and deoxycytidylate deaminase zinc-binding region family protein, expressed |
TAIR PP10 |
AT1G68720.1 |
+3 |
3e-108 |
378 |
347/1202 (29%) |
| Symbols: TADA, ATTADA | tRNA arginine adenosine deaminase | chr1:25804547-25808820 FORWARD LENGTH=1307 |