- Predicted Gene MLOC_80711
MLOC_80711 FPKM values
| FPKM by Treatment | FPKM by Replicate |

| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 29.0735 | 16.5599 | 16.8358 | 19.6507 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 9.40287 | 5.31904 | 8.80197 | 6.3844 |
| INF1 | Young developing inflorescences (5mm) | 15.4096 | 20.8697 | 20.978 | 17.5315 |
| INF2 | Developing inflorescences (1-1.5 cm) | 13.228 | 18.2144 | 14.3256 | 17.9457 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 30.4785 | 16.5241 | 13.8883 | 20.1098 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 25.852 | 35.2558 | 37.7749 | 106.017 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 15.7443 | 17.7268 | 18.7732 | 18.2136 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 6.00464 | 5.87959 | 5.8334 | 14.5672 |
CDS Structure of MLOC_80711
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_80711.3
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os07g35600.2 |
-3 |
5e-89 |
285 |
188/293 (64%) |
13107.m03645 protein expressed protein |
| TAIR PP10 |
AT5G01660.1 |
-2 |
1e-38 |
152 |
80/155 (52%) |
CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Development/cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: DCD (Development and Cell Death) domain protein (TAIR:AT3G11000.1); Has 16133 Blast hits to 7053 proteins in 482 species: Archae - 40; Bacteria - 1227; Metazoa - 10756; Fungi - 311; Plants - 1896; Viruses - 673; Other Eukaryotes - 1230 (source: NCBI BLink). | chr5:244504-248442 REVERSE LENGTH=656 |