MLOC_80711 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains29.073516.559916.835819.6507
LEAShoots from the seedlings (10 cm shoot stage)9.402875.319048.801976.3844
INF1Young developing inflorescences (5mm)15.409620.869720.97817.5315
INF2Developing inflorescences (1-1.5 cm)13.22818.214414.325617.9457
ROORoots from the seedlings (10 cm shoot stage)30.478516.524113.888320.1098
NODDeveloping tillers at six leaf stage, 3rd internode25.85235.255837.7749106.017
CAR5Developing grain, bracts removed (5 DPA)15.744317.726818.773218.2136
CAR15Developing grain, bracts removed (15 DPA)6.004645.879595.833414.5672



CDS Structure of MLOC_80711






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_80711.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK364515NoneNoneNoneNone
MLOC_80711.3CUST_6799_PI427708080AvailableAvailablecontig_92383 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g35600.2 -3 5e-89 285 188/293 (64%) 13107.m03645 protein expressed protein
TAIR PP10 AT5G01660.1 -2 1e-38 152 80/155 (52%) CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Development/cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: DCD (Development and Cell Death) domain protein (TAIR:AT3G11000.1); Has 16133 Blast hits to 7053 proteins in 482 species: Archae - 40; Bacteria - 1227; Metazoa - 10756; Fungi - 311; Plants - 1896; Viruses - 673; Other Eukaryotes - 1230 (source: NCBI BLink). | chr5:244504-248442 REVERSE LENGTH=656