MLOC_80700 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.6978240.2306760.300480.342817
LEAShoots from the seedlings (10 cm shoot stage)00.10839900.0754806
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)10.06988.581825.333028.13941
NODDeveloping tillers at six leaf stage, 3rd internode0000
CAR5Developing grain, bracts removed (5 DPA)0000
CAR15Developing grain, bracts removed (15 DPA)0000



CDS Structure of MLOC_80700






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_80700.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK369791NoneNoneNoneNone
MLOC_80700.1CUST_515_PI427708083AvailableAvailablecontig_92299 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g06260.1 +3 6e-85 259 160/215 (74%) 13112.m00638 protein harpin-induced protein 1 domain containing protein, expressed
TAIR PP10 AT5G22200.1 +3 2e-45 157 87/185 (47%) Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr5:7355688-7356871 FORWARD LENGTH=210