MLOC_80636 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.001660.6179740.8556770.87556
LEAShoots from the seedlings (10 cm shoot stage)3.572225.724268.932095.82735
INF1Young developing inflorescences (5mm)1.45051.435192.139781.67882
INF2Developing inflorescences (1-1.5 cm)1.640651.441211.825062.11739
ROORoots from the seedlings (10 cm shoot stage)3.180641.019553.88972.14723
NODDeveloping tillers at six leaf stage, 3rd internode2.479393.2510211.938717.3438
CAR5Developing grain, bracts removed (5 DPA)0.3502910.7915060.2969050.622034
CAR15Developing grain, bracts removed (15 DPA)0.1839450.3248060.1565510.689792



CDS Structure of MLOC_80636






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_80636.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_80636.2CUST_10761_PI427708083AvailableAvailablecontig_91834 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g11390.1 +2 3e-103 315 156/185 (84%) 13111.m01208 protein ribosomal protein, putative, expressed
TAIR PP10 AT1G66580.1 +2 1e-98 302 149/182 (82%) | Symbols: SAG24, RPL10C | senescence associated gene 24 | chr1:24839208-24840439 FORWARD LENGTH=221