- Predicted Gene MLOC_80636
MLOC_80636 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 1.00166 | 0.617974 | 0.855677 | 0.87556 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 3.57222 | 5.72426 | 8.93209 | 5.82735 |
INF1 | Young developing inflorescences (5mm) | 1.4505 | 1.43519 | 2.13978 | 1.67882 |
INF2 | Developing inflorescences (1-1.5 cm) | 1.64065 | 1.44121 | 1.82506 | 2.11739 |
ROO | Roots from the seedlings (10 cm shoot stage) | 3.18064 | 1.01955 | 3.8897 | 2.14723 |
NOD | Developing tillers at six leaf stage, 3rd internode | 2.47939 | 3.25102 | 11.9387 | 17.3438 |
CAR5 | Developing grain, bracts removed (5 DPA) | 0.350291 | 0.791506 | 0.296905 | 0.622034 |
CAR15 | Developing grain, bracts removed (15 DPA) | 0.183945 | 0.324806 | 0.156551 | 0.689792 |
CDS Structure of MLOC_80636
Members of Gene Cluster
This cluster has a confidence assignment of
non-High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_80636.2
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os11g11390.1 |
+2 |
3e-103 |
315 |
156/185 (84%) |
13111.m01208 protein ribosomal protein, putative, expressed |
TAIR PP10 |
AT1G66580.1 |
+2 |
1e-98 |
302 |
149/182 (82%) |
| Symbols: SAG24, RPL10C | senescence associated gene 24 | chr1:24839208-24840439 FORWARD LENGTH=221 |