MLOC_80597 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains24.047219.30218.389820.7411
LEAShoots from the seedlings (10 cm shoot stage)27.332124.514329.879224.0669
INF1Young developing inflorescences (5mm)32.860937.106234.411828.5594
INF2Developing inflorescences (1-1.5 cm)34.074235.743434.489937.5342
ROORoots from the seedlings (10 cm shoot stage)15.715321.532216.407625.3371
NODDeveloping tillers at six leaf stage, 3rd internode16.24929.232230.954799.7754
CAR5Developing grain, bracts removed (5 DPA)23.660226.374128.205224.9871
CAR15Developing grain, bracts removed (15 DPA)9.8334810.151812.843522.9083



CDS Structure of MLOC_80597






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_80597.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_80597.2CUST_16765_PI427708080AvailableAvailablecontig_9154 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g08210.1 -3 0.0 531 256/274 (93%) 13108.m00851 protein SET domain containing protein, expressed
TAIR PP10 AT4G15180.1 -3 3e-119 382 176/273 (64%) | Symbols: SDG2, ATXR3 | SET domain protein 2 | chr4:8651999-8662178 FORWARD LENGTH=2335