MLOC_80585 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.103130.1660070.3792320.172665
LEAShoots from the seedlings (10 cm shoot stage)0.465190.08451790.1458220.18812
INF1Young developing inflorescences (5mm)0.05828990.1674730.1400540.0943461
INF2Developing inflorescences (1-1.5 cm)0.5722580.3250070.2740950.40894
ROORoots from the seedlings (10 cm shoot stage)00.2974590.3718610.273596
NODDeveloping tillers at six leaf stage, 3rd internode0.03399180.1762990.07742190.424343
CAR5Developing grain, bracts removed (5 DPA)0.5703660.4097550.566950.41587
CAR15Developing grain, bracts removed (15 DPA)0.5085430.3868730.4151190.907207



CDS Structure of MLOC_80585






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_80585.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_80585.1NoneAvailableAvailablecontig_91486 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g54380.1 -1 1e-17 76 36/48 (75%) 13101.m05712 protein PPR repeat domain containing protein, putative, expressed
TAIR PP10 AT2G27800.1 -1 8e-12 61 27/48 (56%) Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:11849789-11851351 REVERSE LENGTH=442