MLOC_80571 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.974623.246414.537433.75333
LEAShoots from the seedlings (10 cm shoot stage)23.858626.309329.371119.1682
INF1Young developing inflorescences (5mm)0.091141900.1138230.102661
INF2Developing inflorescences (1-1.5 cm)00.062470.0369130.0629899
ROORoots from the seedlings (10 cm shoot stage)3.697692.86213.399463.0144
NODDeveloping tillers at six leaf stage, 3rd internode110.84114.919155.623275.244
CAR5Developing grain, bracts removed (5 DPA)8.3669210.79598.767789.47665
CAR15Developing grain, bracts removed (15 DPA)0.6301440.3956670.5070211.29773



CDS Structure of MLOC_80571






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_80571.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK374952NoneNoneNoneNone
MLOC_80571.3CUST_6795_PI427708080AvailableAvailablecontig_91427 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g60509.2 -3 1e-104 314 177/214 (83%) 13103.m06636 protein expressed protein
TAIR PP10 AT3G55120.1 -3 6e-68 219 118/211 (56%) | Symbols: TT5, A11, CFI | Chalcone-flavanone isomerase family protein | chr3:20430248-20431415 REVERSE LENGTH=246