MLOC_80542 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.715111.09370.8385431.50314
LEAShoots from the seedlings (10 cm shoot stage)00.50053800.573975
INF1Young developing inflorescences (5mm)00.06199820.2078420.176343
INF2Developing inflorescences (1-1.5 cm)17.36740.15819114.726411.1533
ROORoots from the seedlings (10 cm shoot stage)1.074165.071870.955825.56396
NODDeveloping tillers at six leaf stage, 3rd internode0.1400090.2144340.2096370.68005
CAR5Developing grain, bracts removed (5 DPA)0000
CAR15Developing grain, bracts removed (15 DPA)57.275444.913438.8238129.062



CDS Structure of MLOC_80542






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_80542.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_80542.1CUST_17863_PI427708080AvailableAvailablecontig_9121 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g46600.1 -1 6e-30 110 53/67 (79%) 13101.m04791 protein seed maturation protein PM41, putative, expressed
TAIR PP10 AT2G21820.1 -1 3e-19 81 36/54 (67%) unknown protein; Has 45 Blast hits to 45 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:9302983-9303219 REVERSE LENGTH=78