MLOC_8050 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.2510720.04685990.06407530.103518
LEAShoots from the seedlings (10 cm shoot stage)0.5198240.2502610.3091030.332684
INF1Young developing inflorescences (5mm)0.07807470.6411780.5804450.451967
INF2Developing inflorescences (1-1.5 cm)0.3918970.4007470.5447140.521738
ROORoots from the seedlings (10 cm shoot stage)1.197330.4915611.206850.829009
NODDeveloping tillers at six leaf stage, 3rd internode0.4683370.36810.2562791.17871
CAR5Developing grain, bracts removed (5 DPA)0.1933970.1350580.04808540.134004
CAR15Developing grain, bracts removed (15 DPA)2.951632.865191.940786.94881



CDS Structure of MLOC_8050






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_8050.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_8050.1CUST_10746_PI427708083AvailableAvailablecontig_140988 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g10510.2 +3 1e-82 257 121/138 (88%) 13111.m09210 protein dehydrogenase, putative, expressed
TAIR PP10 AT1G77120.1 +3 1e-71 230 105/138 (76%) | Symbols: ADH1, ADH, ATADH, ATADH1 | alcohol dehydrogenase 1 | chr1:28975509-28977216 FORWARD LENGTH=379