- Predicted Gene MLOC_80490
MLOC_80490 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_80490_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_80490_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 3.81649 | 3.88152 | 4.39315 | 3.56556 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 1.81604 | 2.66014 | 2.27146 | 1.70838 |
INF1 | Young developing inflorescences (5mm) | 0.854426 | 1.0503 | 1.51547 | 0.840287 |
INF2 | Developing inflorescences (1-1.5 cm) | 0.612552 | 0.243774 | 0.667047 | 0.468335 |
ROO | Roots from the seedlings (10 cm shoot stage) | 5.78892 | 4.38478 | 4.32781 | 4.82475 |
NOD | Developing tillers at six leaf stage, 3rd internode | 2.48976 | 3.56704 | 4.86917 | 10.5892 |
CAR5 | Developing grain, bracts removed (5 DPA) | 0.62016 | 0.894915 | 0.635401 | 0.624088 |
CAR15 | Developing grain, bracts removed (15 DPA) | 0.0886277 | 0.0931882 | 0.0860979 | 0.192036 |
CDS Structure of MLOC_80490
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_80490.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os10g07310.1 |
+3 |
7e-51 |
155 |
86/275 (31%) |
13110.m00649 protein retrotransposon protein, putative, unclassified |
TAIR PP10 |
AT3G24255.1 |
+3 |
6e-13 |
72 |
54/210 (26%) |
RNA-directed DNA polymerase (reverse transcriptase)-related family protein | chr3:8789471-8793208 FORWARD LENGTH=746 |