MLOC_80490 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.816493.881524.393153.56556
LEAShoots from the seedlings (10 cm shoot stage)1.816042.660142.271461.70838
INF1Young developing inflorescences (5mm)0.8544261.05031.515470.840287
INF2Developing inflorescences (1-1.5 cm)0.6125520.2437740.6670470.468335
ROORoots from the seedlings (10 cm shoot stage)5.788924.384784.327814.82475
NODDeveloping tillers at six leaf stage, 3rd internode2.489763.567044.8691710.5892
CAR5Developing grain, bracts removed (5 DPA)0.620160.8949150.6354010.624088
CAR15Developing grain, bracts removed (15 DPA)0.08862770.09318820.08609790.192036



CDS Structure of MLOC_80490






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_80490.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_80490.1CUST_16751_PI427708080AvailableAvailablecontig_9078 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g07310.1 +3 7e-51 155 86/275 (31%) 13110.m00649 protein retrotransposon protein, putative, unclassified
TAIR PP10 AT3G24255.1 +3 6e-13 72 54/210 (26%) RNA-directed DNA polymerase (reverse transcriptase)-related family protein | chr3:8789471-8793208 FORWARD LENGTH=746