MLOC_80445 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.871227.672396.823917.51779
LEAShoots from the seedlings (10 cm shoot stage)8.913916.759466.668996.55107
INF1Young developing inflorescences (5mm)20.493822.930223.1919.41
INF2Developing inflorescences (1-1.5 cm)16.586619.218620.086520.86
ROORoots from the seedlings (10 cm shoot stage)8.1853310.57969.1618812.7292
NODDeveloping tillers at six leaf stage, 3rd internode3.501182.991023.0167210.2845
CAR5Developing grain, bracts removed (5 DPA)9.451359.638219.4639.64761
CAR15Developing grain, bracts removed (15 DPA)1.888952.675191.739035.1836



CDS Structure of MLOC_80445






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_80445.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK356175NoneNoneNoneNone
MLOC_80445.1CUST_6782_PI427708080AvailableAvailablecontig_90548 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g05420.1 +3 0.0 686 362/440 (82%) 13112.m00546 protein calmodulin-binding protein, putative, expressed
TAIR PP10 AT3G52870.1 +3 2e-158 469 254/408 (62%) IQ calmodulin-binding motif family protein | chr3:19593365-19595686 REVERSE LENGTH=456