- Predicted Gene MLOC_80440
MLOC_80440 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_80440_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_80440_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 37.9449 | 27.9419 | 30.2277 | 30.5218 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 20.7998 | 16.3102 | 19.6632 | 14.3744 |
INF1 | Young developing inflorescences (5mm) | 14.4302 | 16.4053 | 19.3852 | 14.5982 |
INF2 | Developing inflorescences (1-1.5 cm) | 18.1775 | 15.3249 | 16.8614 | 18.7851 |
ROO | Roots from the seedlings (10 cm shoot stage) | 28.1397 | 12.5992 | 15.9327 | 15.5786 |
NOD | Developing tillers at six leaf stage, 3rd internode | 9.15271 | 13.3121 | 15.3295 | 34.4382 |
CAR5 | Developing grain, bracts removed (5 DPA) | 6.75279 | 6.92862 | 7.67614 | 7.04464 |
CAR15 | Developing grain, bracts removed (15 DPA) | 7.88301 | 5.68987 | 7.40712 | 17.2591 |
CDS Structure of MLOC_80440
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_80440.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os07g01020.1 |
-3 |
0.0 |
523 |
288/319 (90%) |
13107.m00002 protein SOR/SNZ family protein, putative, expressed |
TAIR PP10 |
AT5G01410.1 |
-3 |
3e-172 |
496 |
266/314 (85%) |
| Symbols: PDX1, ATPDX1.3, RSR4, PDX1.3, ATPDX1 | Aldolase-type TIM barrel family protein | chr5:172576-173505 REVERSE LENGTH=309 |