MLOC_80440 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains37.944927.941930.227730.5218
LEAShoots from the seedlings (10 cm shoot stage)20.799816.310219.663214.3744
INF1Young developing inflorescences (5mm)14.430216.405319.385214.5982
INF2Developing inflorescences (1-1.5 cm)18.177515.324916.861418.7851
ROORoots from the seedlings (10 cm shoot stage)28.139712.599215.932715.5786
NODDeveloping tillers at six leaf stage, 3rd internode9.1527113.312115.329534.4382
CAR5Developing grain, bracts removed (5 DPA)6.752796.928627.676147.04464
CAR15Developing grain, bracts removed (15 DPA)7.883015.689877.4071217.2591



CDS Structure of MLOC_80440






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_80440.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK367625NoneNoneNoneNone
MLOC_80440.1CUST_6780_PI427708080AvailableAvailablecontig_90536 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g01020.1 -3 0.0 523 288/319 (90%) 13107.m00002 protein SOR/SNZ family protein, putative, expressed
TAIR PP10 AT5G01410.1 -3 3e-172 496 266/314 (85%) | Symbols: PDX1, ATPDX1.3, RSR4, PDX1.3, ATPDX1 | Aldolase-type TIM barrel family protein | chr5:172576-173505 REVERSE LENGTH=309