MLOC_80407 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.868313001.32076
LEAShoots from the seedlings (10 cm shoot stage)0.597701000.57293
INF1Young developing inflorescences (5mm)1.484830.3189132.497321.78461
INF2Developing inflorescences (1-1.5 cm)0.6680260.8569630.3860151.2095
ROORoots from the seedlings (10 cm shoot stage)00.40993403.7126
NODDeveloping tillers at six leaf stage, 3rd internode0000
CAR5Developing grain, bracts removed (5 DPA)1.1690100.3451021.03507
CAR15Developing grain, bracts removed (15 DPA)0000



CDS Structure of MLOC_80407






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_80407.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_80407.1CUST_10733_PI427708083AvailableAvailablecontig_90333 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g17100.1 -1 1e-20 82 38/46 (83%) 13103.m02043 protein Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
TAIR PP10 AT5G27670.1 -1 8e-21 81 39/46 (85%) | Symbols: HTA7 | histone H2A 7 | chr5:9792807-9793365 REVERSE LENGTH=150