MLOC_80387 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains316.091236.793250.765265.552
LEAShoots from the seedlings (10 cm shoot stage)116.766142.209153.226121.438
INF1Young developing inflorescences (5mm)128.602139.331143.181119.915
INF2Developing inflorescences (1-1.5 cm)176.972163.299184.867187.978
ROORoots from the seedlings (10 cm shoot stage)341.967187.533197258.022
NODDeveloping tillers at six leaf stage, 3rd internode83.3442137.574165.358473.112
CAR5Developing grain, bracts removed (5 DPA)227.635239.495248.776230.283
CAR15Developing grain, bracts removed (15 DPA)96.39184.7883103.037214.743



CDS Structure of MLOC_80387






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_80387.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK251841.1NoneNoneNoneNone
MLOC_80387.3CUST_6777_PI427708080AvailableAvailablecontig_90217 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g18860.2 -2 0.0 738 374/396 (94%) 13101.m02049 protein S-adenosylmethionine synthetase, putative, expressed
TAIR PP10 AT4G01850.2 -2 0.0 706 353/393 (90%) | Symbols: SAM-2, MAT2, SAM2, AtSAM2 | S-adenosylmethionine synthetase 2 | chr4:796298-797479 REVERSE LENGTH=393