MLOC_80384 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains8.928866.866927.237977.34107
LEAShoots from the seedlings (10 cm shoot stage)5.361276.06416.968484.68947
INF1Young developing inflorescences (5mm)2.02692.265712.650872.10427
INF2Developing inflorescences (1-1.5 cm)1.518822.321922.277782.41205
ROORoots from the seedlings (10 cm shoot stage)11.27935.963587.389297.17901
NODDeveloping tillers at six leaf stage, 3rd internode12.704815.062223.335942.7212
CAR5Developing grain, bracts removed (5 DPA)4.432175.683355.446155.55946
CAR15Developing grain, bracts removed (15 DPA)0.4888810.858660.8282751.9426



CDS Structure of MLOC_80384






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_80384.4
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_80384.4CUST_16737_PI427708080AvailableAvailablecontig_90203 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g28730.1 +1 8e-174 501 250/314 (80%) 13109.m02835 protein gibberellin receptor GID1L2, putative, expressed
TAIR PP10 AT2G03550.1 +1 6e-67 223 130/315 (41%) alpha/beta-Hydrolases superfamily protein | chr2:1077080-1078018 FORWARD LENGTH=312