MLOC_80329 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.3961361.284310.6062730.86209
LEAShoots from the seedlings (10 cm shoot stage)2.103541.532851.204471.35502
INF1Young developing inflorescences (5mm)2.277652.695893.55382.22441
INF2Developing inflorescences (1-1.5 cm)3.927863.243193.613643.77828
ROORoots from the seedlings (10 cm shoot stage)0.3705221.180.7110031.1689
NODDeveloping tillers at six leaf stage, 3rd internode0.09812450.358750.630841.21554
CAR5Developing grain, bracts removed (5 DPA)2.717683.970822.950733.1007
CAR15Developing grain, bracts removed (15 DPA)1.547941.4781.36753.31525



CDS Structure of MLOC_80329






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_80329.4
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_80329.4CUST_10722_PI427708083AvailableAvailablecontig_8986 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g61560.1 +3 2e-120 335 190/280 (68%) 13103.m06778 protein expressed protein
TAIR PP10 AT3G16810.1 +3 2e-62 217 138/334 (41%) | Symbols: APUM24, PUM24 | pumilio 24 | chr3:5723436-5727539 REVERSE LENGTH=641