MLOC_80252 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains01.071861.017570
LEAShoots from the seedlings (10 cm shoot stage)1.177410.915690.6311230.568168
INF1Young developing inflorescences (5mm)2.919254.123383.821393.18352
INF2Developing inflorescences (1-1.5 cm)4.799944.779714.270185.21044
ROORoots from the seedlings (10 cm shoot stage)1.630541.646780.7536040.6987
NODDeveloping tillers at six leaf stage, 3rd internode0.4128820.3381090.06768894.41006
CAR5Developing grain, bracts removed (5 DPA)1.19460.8616930.7334050.820564
CAR15Developing grain, bracts removed (15 DPA)0.03178140.1196680.1704390.00569994



CDS Structure of MLOC_80252






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_80252.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_80252.1CUST_10706_PI427708083AvailableAvailablecontig_89506 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g50330.1 -2 1e-137 430 204/259 (79%) 13102.m05711 protein RNA-dependent RNA polymerase, putative, expressed
TAIR PP10 AT1G14790.1 -2 3e-88 305 154/261 (59%) | Symbols: RDR1, ATRDRP1 | RNA-dependent RNA polymerase 1 | chr1:5094317-5097817 REVERSE LENGTH=1107