- Predicted Gene MLOC_80195
MLOC_80195 FPKM values
| FPKM by Treatment | FPKM by Replicate |

| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 12.4566 | 13.2195 | 13.6067 | 11.061 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 10.1185 | 9.82971 | 14.5056 | 8.48618 |
| INF1 | Young developing inflorescences (5mm) | 12.183 | 14.2716 | 17.7163 | 9.69587 |
| INF2 | Developing inflorescences (1-1.5 cm) | 10.9569 | 12.0773 | 11.2079 | 10.5695 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 10.2044 | 12.566 | 8.86128 | 11.985 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 9.99622 | 11.6422 | 15.209 | 34.9534 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 9.71683 | 9.65759 | 9.55169 | 7.7082 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 7.81482 | 7.31443 | 7.45065 | 13.7538 |
CDS Structure of MLOC_80195
Members of Gene Cluster
This cluster has a confidence assignment of
non-High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_80195.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os03g11470.1 |
-2 |
4e-146 |
454 |
222/265 (84%) |
13103.m01294 protein DEAD/DEAH box helicase domain containing protein, expressed |
| TAIR PP10 |
AT5G61140.1 |
-2 |
3e-92 |
313 |
154/266 (58%) |
U5 small nuclear ribonucleoprotein helicase | chr5:24589999-24603311 FORWARD LENGTH=2146 |