MLOC_80195 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains12.456613.219513.606711.061
LEAShoots from the seedlings (10 cm shoot stage)10.11859.8297114.50568.48618
INF1Young developing inflorescences (5mm)12.18314.271617.71639.69587
INF2Developing inflorescences (1-1.5 cm)10.956912.077311.207910.5695
ROORoots from the seedlings (10 cm shoot stage)10.204412.5668.8612811.985
NODDeveloping tillers at six leaf stage, 3rd internode9.9962211.642215.20934.9534
CAR5Developing grain, bracts removed (5 DPA)9.716839.657599.551697.7082
CAR15Developing grain, bracts removed (15 DPA)7.814827.314437.4506513.7538



CDS Structure of MLOC_80195






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_80195.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_80195.1CUST_10695_PI427708083AvailableAvailablecontig_89211 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g11470.1 -2 4e-146 454 222/265 (84%) 13103.m01294 protein DEAD/DEAH box helicase domain containing protein, expressed
TAIR PP10 AT5G61140.1 -2 3e-92 313 154/266 (58%) U5 small nuclear ribonucleoprotein helicase | chr5:24589999-24603311 FORWARD LENGTH=2146