MLOC_80158 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains315.719257.128266.415302.881
LEAShoots from the seedlings (10 cm shoot stage)99.426547.80371.102863.4795
INF1Young developing inflorescences (5mm)71.910776.293470.245368.8542
INF2Developing inflorescences (1-1.5 cm)36.882140.146645.556450.127
ROORoots from the seedlings (10 cm shoot stage)321.344261.623162.653335.878
NODDeveloping tillers at six leaf stage, 3rd internode474.707452.15489.5151498.12
CAR5Developing grain, bracts removed (5 DPA)147.112160.996162.058178.317
CAR15Developing grain, bracts removed (15 DPA)18.662815.595817.597844.9414



CDS Structure of MLOC_80158






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_80158.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK362400NoneNoneNoneNone
MLOC_80158.1CUST_6771_PI427708080AvailableAvailablecontig_8900 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g22030.1 +3 0.0 815 401/475 (84%) 13112.m02237 protein serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
TAIR PP10 AT4G13930.1 +3 0.0 806 396/471 (84%) | Symbols: SHM4 | serine hydroxymethyltransferase 4 | chr4:8048013-8050021 REVERSE LENGTH=471