MLOC_80136 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains12.627.869299.455548.30432
LEAShoots from the seedlings (10 cm shoot stage)4.871833.538783.737993.03192
INF1Young developing inflorescences (5mm)13.930119.417421.189913.3882
INF2Developing inflorescences (1-1.5 cm)9.3192811.39858.005319.94776
ROORoots from the seedlings (10 cm shoot stage)11.55739.848357.405799.91073
NODDeveloping tillers at six leaf stage, 3rd internode1.333311.208923.491764.13268
CAR5Developing grain, bracts removed (5 DPA)3.98164.131922.714663.28788
CAR15Developing grain, bracts removed (15 DPA)0.4807020.9536060.2313521.27962



CDS Structure of MLOC_80136






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_80136.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_80136.1CUST_16709_PI427708080AvailableAvailablecontig_88836 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g20280.1 +1 4e-46 153 74/84 (88%) 13102.m29150 protein conserved hypothetical protein
TAIR PP10 AT5G53045.1 +1 4e-31 113 53/80 (66%) unknown protein; Has 122 Blast hits to 122 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 46; Fungi - 30; Plants - 41; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). | chr5:21508603-21509538 REVERSE LENGTH=96