MLOC_80127 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.349064.78856.102754.34222
LEAShoots from the seedlings (10 cm shoot stage)4.781112.358373.345182.43995
INF1Young developing inflorescences (5mm)4.186044.251894.072092.74174
INF2Developing inflorescences (1-1.5 cm)2.832492.921644.154672.66939
ROORoots from the seedlings (10 cm shoot stage)7.900976.135126.176695.61727
NODDeveloping tillers at six leaf stage, 3rd internode5.961563.215083.996098.25339
CAR5Developing grain, bracts removed (5 DPA)5.941156.223297.726754.69541
CAR15Developing grain, bracts removed (15 DPA)1.51451.426631.180042.56777



CDS Structure of MLOC_80127






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_80127.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK367858NoneNoneNoneNone
MLOC_80127.2CUST_6768_PI427708080AvailableAvailablecontig_88787 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g34540.1 -1 3e-115 365 237/304 (78%) 13102.m03741 protein tetratricopeptide repeat containing protein, putative, expressed
TAIR PP10 AT4G39820.1 -1 4e-64 225 126/234 (54%) Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:18476698-18477924 REVERSE LENGTH=408