- Predicted Gene MLOC_80115
MLOC_80115 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 44.8669 | 28.3004 | 29.8341 | 33.5724 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 4.39535 | 0.300127 | 1.21727 | 1.66835 |
INF1 | Young developing inflorescences (5mm) | 0.0329885 | 0 | 0 | 0.0303717 |
INF2 | Developing inflorescences (1-1.5 cm) | 0.0682718 | 0 | 0 | 0.0851545 |
ROO | Roots from the seedlings (10 cm shoot stage) | 49.3659 | 39.9266 | 37.491 | 48.2446 |
NOD | Developing tillers at six leaf stage, 3rd internode | 15.7903 | 35.8296 | 0.9126 | 80.2811 |
CAR5 | Developing grain, bracts removed (5 DPA) | 0.41004 | 0.345272 | 0.243828 | 0.348497 |
CAR15 | Developing grain, bracts removed (15 DPA) | 5.10138 | 4.84564 | 3.80527 | 11.9508 |
CDS Structure of MLOC_80115
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_80115.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os08g13920.1 |
-2 |
1e-114 |
341 |
160/250 (64%) |
13108.m01491 protein glycosyl hydrolases family 16, putative, expressed |
TAIR PP10 |
AT5G57550.1 |
-2 |
1e-81 |
255 |
116/235 (49%) |
| Symbols: XTR3, XTH25 | xyloglucan endotransglucosylase/hydrolase 25 | chr5:23305055-23306384 REVERSE LENGTH=284 |