MLOC_80115 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains44.866928.300429.834133.5724
LEAShoots from the seedlings (10 cm shoot stage)4.395350.3001271.217271.66835
INF1Young developing inflorescences (5mm)0.0329885000.0303717
INF2Developing inflorescences (1-1.5 cm)0.0682718000.0851545
ROORoots from the seedlings (10 cm shoot stage)49.365939.926637.49148.2446
NODDeveloping tillers at six leaf stage, 3rd internode15.790335.82960.912680.2811
CAR5Developing grain, bracts removed (5 DPA)0.410040.3452720.2438280.348497
CAR15Developing grain, bracts removed (15 DPA)5.101384.845643.8052711.9508



CDS Structure of MLOC_80115






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_80115.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK360629NoneNoneNoneNone
MLOC_80115.1CUST_6766_PI427708080AvailableAvailablecontig_88729 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g13920.1 -2 1e-114 341 160/250 (64%) 13108.m01491 protein glycosyl hydrolases family 16, putative, expressed
TAIR PP10 AT5G57550.1 -2 1e-81 255 116/235 (49%) | Symbols: XTR3, XTH25 | xyloglucan endotransglucosylase/hydrolase 25 | chr5:23305055-23306384 REVERSE LENGTH=284