MLOC_80094 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains935.092761.668900.21851.125
LEAShoots from the seedlings (10 cm shoot stage)906.746609.434775.187596.181
INF1Young developing inflorescences (5mm)130.51784.038982.492689.2403
INF2Developing inflorescences (1-1.5 cm)112.078113.963137.2135.551
ROORoots from the seedlings (10 cm shoot stage)1574.94927.859828.9081036.87
NODDeveloping tillers at six leaf stage, 3rd internode868.099776.838673.6051735.49
CAR5Developing grain, bracts removed (5 DPA)284.4278.647248.365272.749
CAR15Developing grain, bracts removed (15 DPA)91.629186.694689.3872230.095



CDS Structure of MLOC_80094






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_80094.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK249573.1NoneNoneNoneNone
MLOC_80094.2CUST_6765_PI427708080AvailableAvailablecontig_88585 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g44630.2 -3 0.0 527 265/285 (93%) 13102.m04992 protein aquaporin protein, putative, expressed
TAIR PP10 AT4G23400.1 -3 2e-176 501 253/284 (89%) | Symbols: PIP1D, PIP1;5 | plasma membrane intrinsic protein 1;5 | chr4:12220792-12222155 FORWARD LENGTH=287