MLOC_80060 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.05581.929721.289341.83827
LEAShoots from the seedlings (10 cm shoot stage)0.27433100.4506710.290998
INF1Young developing inflorescences (5mm)3.562013.44674.050513.47766
INF2Developing inflorescences (1-1.5 cm)2.364462.869922.335373.08903
ROORoots from the seedlings (10 cm shoot stage)0.4286710.5125170.3451310.555806
NODDeveloping tillers at six leaf stage, 3rd internode00.028918200.185795
CAR5Developing grain, bracts removed (5 DPA)0.3089040.1681780.2055730.239425
CAR15Developing grain, bracts removed (15 DPA)0.1434410.03427160.1640970.287001



CDS Structure of MLOC_80060






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_80060.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_80060.1CUST_16698_PI427708080AvailableAvailablecontig_88427 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g45570.2 -2 7e-92 278 149/209 (71%) 13102.m05113 protein growth regulating factor protein, putative, expressed
TAIR PP10 AT3G52910.1 -2 7e-35 133 72/145 (50%) | Symbols: AtGRF4, GRF4 | growth-regulating factor 4 | chr3:19616177-19618268 REVERSE LENGTH=380