MLOC_80000 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains00.020812600.0437231
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)000.05664880.0249685
NODDeveloping tillers at six leaf stage, 3rd internode0000
CAR5Developing grain, bracts removed (5 DPA)25.269726.060625.67526.6295
CAR15Developing grain, bracts removed (15 DPA)6.896.061236.0051416.5233



CDS Structure of MLOC_80000






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_80000.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK376872NoneNoneNoneNone
MLOC_80000.1CUST_6761_PI427708080AvailableAvailablecontig_88112 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g09930.1 +2 0.0 620 300/515 (58%) 13102.m01095 protein CSLA1 - cellulose synthase-like family A; mannan synthase, expressed
TAIR PP10 AT5G03760.1 +2 0.0 635 311/513 (61%) | Symbols: ATCSLA09, CSLA09, ATCSLA9, CSLA9, RAT4 | Nucleotide-diphospho-sugar transferases superfamily protein | chr5:985910-990087 REVERSE LENGTH=533