MLOC_79988 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains268.86260.712260.998296.585
LEAShoots from the seedlings (10 cm shoot stage)57.927742.481645.786146.0292
INF1Young developing inflorescences (5mm)70.823769.181861.632262.5085
INF2Developing inflorescences (1-1.5 cm)42.34747.371238.793251.765
ROORoots from the seedlings (10 cm shoot stage)100.037129.506108.625174.302
NODDeveloping tillers at six leaf stage, 3rd internode40.721645.956247.8874170.652
CAR5Developing grain, bracts removed (5 DPA)71.23971.715372.359276.9971
CAR15Developing grain, bracts removed (15 DPA)16.083413.901415.575838.842



CDS Structure of MLOC_79988






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_79988.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK353769NoneNoneNoneNone
MLOC_79988.2CUST_6760_PI427708080AvailableAvailablecontig_88056 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g27790.1 -3 0.0 857 405/447 (91%) 13107.m02778 protein glutamate--cysteine ligase, chloroplast precursor, putative, expressed
TAIR PP10 AT4G23100.3 -3 0.0 781 366/447 (82%) | Symbols: GSH1 | glutamate-cysteine ligase | chr4:12103458-12106751 REVERSE LENGTH=522