MLOC_79952 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains14.442412.44911.440613.8267
LEAShoots from the seedlings (10 cm shoot stage)7.784385.74145.462745.6899
INF1Young developing inflorescences (5mm)13.670911.856510.318310.6977
INF2Developing inflorescences (1-1.5 cm)9.0621610.173911.271211.8067
ROORoots from the seedlings (10 cm shoot stage)9.0773712.005712.023315.4023
NODDeveloping tillers at six leaf stage, 3rd internode1.273051.455373.57786.49105
CAR5Developing grain, bracts removed (5 DPA)13.405913.691816.479215.427
CAR15Developing grain, bracts removed (15 DPA)3.715822.751424.123328.38735



CDS Structure of MLOC_79952






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_79952.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK354274NoneNoneNoneNone
MLOC_79952.1CUST_6756_PI427708080AvailableAvailablecontig_87804 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g67210.1 -1 0.0 766 381/490 (78%) 13101.m07288 protein PPR repeat domain containing protein, putative, expressed
TAIR PP10 AT3G02650.1 -1 4e-129 399 224/492 (46%) Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:568135-569865 FORWARD LENGTH=576