MLOC_79902 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.435110.9761710.6698660.733717
LEAShoots from the seedlings (10 cm shoot stage)2.668322.088322.071891.28888
INF1Young developing inflorescences (5mm)7.017217.761469.440893.84968
INF2Developing inflorescences (1-1.5 cm)8.0263812.22449.909687.10291
ROORoots from the seedlings (10 cm shoot stage)0.5265131.626141.547770.959609
NODDeveloping tillers at six leaf stage, 3rd internode0.7001510.3333461.239880.964363
CAR5Developing grain, bracts removed (5 DPA)3.805413.382432.207461.97396
CAR15Developing grain, bracts removed (15 DPA)0.9924750.6637641.209771.43071



CDS Structure of MLOC_79902






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_79902.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_79902.1CUST_13391_PI427708083AvailableAvailablecontig_8750 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g49990.2 +2 2e-40 146 71/74 (96%) 13104.m05113 protein AT hook motif domain containing protein, expressed
TAIR PP10 AT4G12080.1 +2 4e-25 102 48/72 (67%) | Symbols: AHL1, ATAHL1 | AT-hook motif nuclear-localized protein 1 | chr4:7239466-7241246 FORWARD LENGTH=356